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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6495964_6496186_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6495964 - 6496186
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
TAAAACTGGAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTCCTTTTAAAA
Flanking Amino Acid:
LYLLHTLAHYGFLRSQPGSG
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
66
39.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
42.3
-0.4
1.7
38.7
43.8
Minor 5ss
33.5
-1.9
3.4
46.4
42.4
Minor BPS
55.5
0.17
1.4
60.98
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031100
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041975
6494992 - 6496255
1264