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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6495989_6496831_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6495989 - 6496831
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCTGA
5'SS Class:
major
3'SS Sequence:
TGGCTTTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
CTGCACTGAACT
Flanking Amino Acid:
VFGVKIAIVTKRERSKVPYI
Intron Amino Acid Position:
1070

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
64.8
37.9
Major BPS
62
0.3
1
53
34.1
Major PPT
68.3
0.41
1.1
71.8
38.4
Minor 5ss
39.5
-1.2
3
46.6
43.3
Minor BPS
55
0.23
1.7
71.62
44.6

Associated Gene:

Gene:
BCR
Ensembl Gene ID:
ENSAPLG00000009133
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009520
6491595 - 6586112
94518