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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6496942_6497071_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6496942 - 6497071
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
WQRTVISMNGVEVKLSVKFT
Intron Amino Acid Position:
1034

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85
0.79
0.8
84.4
29.4
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
BCR
Ensembl Gene ID:
ENSAPLG00000009133
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009520
6491595 - 6586112
94518