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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6497132_6505341_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6497132 - 6505341
Intron Length:
8210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
CCATGTTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
CTGTTCCTAGCT
Flanking Amino Acid:
DRIMGKGQIQLDPQALQDKD
Intron Amino Acid Position:
1014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
79.2
0.66
0.9
76.1
37.6
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
50.9
0.11
2
71.96
45

Associated Gene:

Gene:
BCR
Ensembl Gene ID:
ENSAPLG00000009133
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009520
6491595 - 6586112
94518