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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6505474_6506144_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6505474 - 6506144
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TGGTGCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GGTGTATTCATT
Flanking Amino Acid:
RDTTEPNWNEEFEIELEGSQ
Intron Amino Acid Position:
970

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1
75
38.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
70.6
0.46
1
62.7
39.7
Minor 5ss
38.2
-1.3
3.1
49.4
46.8
Minor BPS
44.7
-0.3
2
61.87
42.4

Associated Gene:

Gene:
BCR
Ensembl Gene ID:
ENSAPLG00000009133
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009520
6491595 - 6586112
94518