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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6506243_6506959_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6506243 - 6506959
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTTTTTAAAG
Flanking Amino Acid:
HSATGFKQSSNLYCTLEVDS
Intron Amino Acid Position:
937

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
72
34.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.3
0.66
0.7
76.9
25.1
Minor 5ss
36.8
-1.5
2.9
43.8
38
Minor BPS
63.1
0.27
1.4
63.82
37.9

Associated Gene:

Gene:
BCR
Ensembl Gene ID:
ENSAPLG00000009133
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009520
6491595 - 6586112
94518