About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6511010_6511269_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6511010 - 6511269
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGTTT
5'SS Class:
major
3'SS Sequence:
TTCTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
AGGTTTGGAACT
Flanking Amino Acid:
LCAKLKKQIGGKSQQYDCKW
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
75.6
36.7
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
86.9
0.83
0.7
84.6
30.4
Minor 5ss
36.8
-1.5
3.5
47.1
48.3
Minor BPS
45.9
-0.2
2
63.16
41.3

Associated Gene:

Gene:
BCR
Ensembl Gene ID:
ENSAPLG00000009133
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009520
6491595 - 6586112
94518