About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6511392_6520380_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6511392 - 6520380
Intron Length:
8989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCACCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
TGTTTTTCACCA
Flanking Amino Acid:
RQSMTVKKGEHRQLLKDSFM
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
80.5
0.69
0.9
74.7
40
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
52.2
0.07
1.8
67.57
39.2

Associated Gene:

Gene:
BCR
Ensembl Gene ID:
ENSAPLG00000009133
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009520
6491595 - 6586112
94518