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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6523762_6527681_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6523762 - 6527681
Intron Length:
3920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
QRVGDLFQKLASQLGVYRAF
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.8
34.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.8
0.74
0.8
77.6
31.2
Minor 5ss
34.2
-1.8
2.8
37
41.8
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
BCR
Ensembl Gene ID:
ENSAPLG00000009133
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009520
6491595 - 6586112
94518