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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_65363_66197_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65363 - 66197
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
GEDNVRALQKFFSRLTERFV
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.3
0.89
0.7
88.4
28.3
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
BRI3BP
Ensembl Gene ID:
ENSAPLG00000009873
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010275
64192 - 66395
2204