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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6593598_6593876_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6593598 - 6593876
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
GGCAACACTCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
AATCCCAGAAGG
Flanking Amino Acid:
MAQIGTGNLITSPSCC*
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
67
34.5
Major BPS
70
0.5
1
59.3
39.1
Major PPT
48.2
-0.1
1.1
38.8
38.8
Minor 5ss
47.8
-0.2
2.5
62.7
43.1
Minor BPS
44.2
-0.5
2
51.05
42.2

Associated Gene:

Gene:
RAB36
Ensembl Gene ID:
ENSAPLG00000008936
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043966
6593578 - 6603637
10060