Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6595350_6596947_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6595350 - 6596947

Intron Length:

1598

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TTCTGCATTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

CTTCCTCTGACT

Flanking Amino Acid:

LTDIQTLDHTKQWLEDALRE

Intron Amino Acid Position:

148

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.9

85.1

25.6

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

81.1

0.7

0.9

77.8

35.2

Minor 5ss

46.5

-0.4

2.7

61.9

36.7

Minor BPS

58.2

0.34

1.7

77.4

39.1

Associated Gene:

Gene:

RAB36

Ensembl Gene ID:

ENSAPLG00000008936

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009308

6590350 - 6604838

14489

ENSAPLT00000043966

6593578 - 6603637

10060