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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6597662_6599811_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6597662 - 6599811
Intron Length:
2150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCATTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTTCTCCATT
Flanking Amino Acid:
EIVGIPYNLQIWDTAGQEKF
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
68.8
0.42
0.9
63.3
36.7
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
59.2
0.37
2
83.48
38.1

Associated Gene:

Gene:
RAB36
Ensembl Gene ID:
ENSAPLG00000008936
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043966
6593578 - 6603637
10060
ENSAPLT00000009308
6590350 - 6604838
14489