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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6619744_6658822_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6619744 - 6658822
Intron Length:
39079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTCTCTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TATTATTGACCT
Flanking Amino Acid:
DLKLYEDNQTSRMAESLRLF
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69.1
35.7
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
85.9
0.81
0.7
80.4
25.1
Minor 5ss
35.2
-1.7
3.2
47.2
42.3
Minor BPS
51.2
0.12
1.9
75.11
41.3

Associated Gene:

Gene:
GNAZ
Ensembl Gene ID:
ENSAPLG00000008934
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009289
6619399 - 6664544
45146