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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6707400_6708264_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6707400 - 6708264
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATGACCA
Flanking Amino Acid:
DIPDEKDDESVSEAGEEPGC
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
31.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.9
0.81
0.8
77.9
36.3
Minor 5ss
35.4
-1.7
3.2
50.9
45.5
Minor BPS
53.1
0.09
2
72.28
39.2

Associated Gene:

Gene:
SLC5A1
Ensembl Gene ID:
ENSAPLG00000007944
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044964
6707179 - 6739293
32115