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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6711798_6712381_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6711798 - 6712381
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
GCTATGTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
GCTAATTGAATA
Flanking Amino Acid:
PSEKELMLAGRAFMLLLIGV
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
75.7
0.58
1
67.9
42.3
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
47.3
-0.2
1.6
54.65
38

Associated Gene:

Gene:
SLC5A1
Ensembl Gene ID:
ENSAPLG00000007944
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044964
6707179 - 6739293
32115
ENSAPLT00000008275
6707179 - 6736946
29768
ENSAPLT00000006602
6707179 - 6735063
27885