About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6712533_6713649_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6712533 - 6713649
Intron Length:
1117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATATTTTCATTT
Flanking Amino Acid:
PKMVVELMPNGLRGLMLSVM
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
100
1.24
0.5
100
0
Major PPT
90.2
0.91
0.7
88.4
28.3
Minor 5ss
33.8
-1.8
3.2
45.3
43.7
Minor BPS
48.6
-0
1.7
66.72
38.6

Associated Gene:

Gene:
SLC5A1
Ensembl Gene ID:
ENSAPLG00000007944
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044964
6707179 - 6739293
32115
ENSAPLT00000008275
6707179 - 6736946
29768
ENSAPLT00000006602
6707179 - 6735063
27885