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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6713758_6714533_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6713758 - 6714533
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTTTGTCTAACC
Flanking Amino Acid:
PGMISRILYTDVVACVVPEI
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.4
41.9
Major BPS
75.8
0.64
1
65.8
41
Major PPT
85.1
0.79
0.7
83.9
24.1
Minor 5ss
49.1
-0.1
2.5
65.5
45.8
Minor BPS
60.1
0.3
2.1
78.9
36.8

Associated Gene:

Gene:
SLC5A1
Ensembl Gene ID:
ENSAPLG00000007944
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044964
6707179 - 6739293
32115
ENSAPLT00000008275
6707179 - 6736946
29768
ENSAPLT00000006602
6707179 - 6735063
27885