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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6714670_6715680_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6714670 - 6715680
Intron Length:
1011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGG
5'SS Class:
major
3'SS Sequence:
GTCTCATTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GTCTCATTGACA
Flanking Amino Acid:
LALWYWCTDQVIVQRCLSGK
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
63.2
43.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
69.7
0.44
1
64.8
40.4
Minor 5ss
36.2
-1.6
3.2
47.4
48
Minor BPS
64.8
0.46
1.6
72.66
38.9

Associated Gene:

Gene:
SLC5A1
Ensembl Gene ID:
ENSAPLG00000007944
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006602
6707179 - 6735063
27885
ENSAPLT00000044964
6707179 - 6739293
32115
ENSAPLT00000008275
6707179 - 6736946
29768