Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6721820_6722191_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6721820 - 6722191

Intron Length:

372

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

AACTCCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAA

U12 Branch Point Sequence:

ATTATCTGAAAC

Flanking Amino Acid:

LFVPIYVKAGVVTMPEYLRK

Intron Amino Acid Position:

110

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

74.1

38.3

Major BPS

73.3

0.58

0.9

63.4

35.6

Major PPT

66.3

0.37

0.9

58.2

32.1

Minor 5ss

33.1

-1.9

2.8

32.9

41.9

Minor BPS

56.7

0.19

1.6

67.9

36.7

Associated Gene:

Gene:

SLC5A1

Ensembl Gene ID:

ENSAPLG00000007944

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008275

6707179 - 6736946

29768