About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6722252_6724679_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6722252 - 6724679
Intron Length:
2428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTGACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
CTTGTCTTGACT
Flanking Amino Acid:
GIAIGGYEWNALIFVVVLGW
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
73
37.8
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
73.4
0.53
1
66.4
39.5
Minor 5ss
35.5
-1.7
3.3
48.1
41.3
Minor BPS
70.2
0.72
1.4
82.19
39.8

Associated Gene:

Gene:
SLC5A1
Ensembl Gene ID:
ENSAPLG00000007944
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008275
6707179 - 6736946
29768