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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6732262_6734438_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6732262 - 6734438
Intron Length:
2177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTTGG
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
ATATGATTAAAT
Flanking Amino Acid:
FLVVLAVGLWAMYSTNRGTV
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
60.6
46.7
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
94.4
1
0.6
87.9
29.4
Minor 5ss
37.8
-1.4
3.1
40.1
46
Minor BPS
51.2
0.12
2.1
74.23
41.8

Associated Gene:

Gene:
SLC5A1
Ensembl Gene ID:
ENSAPLG00000007944
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044964
6707179 - 6739293
32115
ENSAPLT00000008275
6707179 - 6736946
29768
ENSAPLT00000006602
6707179 - 6735063
27885