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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6768608_6776773_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6768608 - 6776773
Intron Length:
8166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TCTGTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AGCCCTTTAAAT
Flanking Amino Acid:
YDDMASAMKSVTELNEPLSN
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
84
0.76
0.8
81.1
35.5
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
60.5
0.41
1.4
70.04
40.5

Associated Gene:

Gene:
YWHAH
Ensembl Gene ID:
ENSAPLG00000000718
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000691
6767951 - 6776860
8910