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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6798394_6799267_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6798394 - 6799267
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
GTCTGCTTAAGG
Flanking Amino Acid:
ENKPQYIHVTGTVFLQLPYS
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
83.6
0.76
0.8
81.3
30.7
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
51.2
-0.1
2.2
59.57
47.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007296
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007663
6798098 - 6821847
23750