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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6809022_6809802_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6809022 - 6809802
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAAGA
5'SS Class:
major
3'SS Sequence:
GTTTATTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
GYVTAGTAEGGSQQCTASSL
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.8
39.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
81.1
0.7
0.9
73.1
41.8
Minor 5ss
27
-2.6
2.7
23.2
36.9
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007296
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007663
6798098 - 6821847
23750