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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6814453_6815239_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6814453 - 6815239
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAA
U12 Branch Point Sequence:
AATGTTTGAACA
Flanking Amino Acid:
SALLEMEASQKTLGEQQAAM
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.6
40.2
Major BPS
69.4
0.48
1.2
63.4
44.3
Major PPT
74.6
0.55
0.9
72.5
37.7
Minor 5ss
34.1
-1.8
3
41.6
39
Minor BPS
54.4
0.13
1.5
63.2
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007296
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007663
6798098 - 6821847
23750