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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6815374_6816273_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6815374 - 6816273
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTCAA
5'SS Class:
major
3'SS Sequence:
TTTCCTTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTGATTTTATTT
Flanking Amino Acid:
RRHRSDRMIRKGSAMKGLQI
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1
63.9
38
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.2
0.66
0.9
81
31
Minor 5ss
29.4
-2.4
2.8
28.6
37
Minor BPS
49.6
0.05
1.6
64.37
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007296
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007663
6798098 - 6821847
23750