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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6817555_6817718_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6817555 - 6817718
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGATGCTAACGT
Flanking Amino Acid:
KIITVTRYLPKYPYESAQIN
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.1
26.4
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
85.6
0.8
0.7
85.1
29.7
Minor 5ss
36.6
-1.5
2.9
46.1
36.1
Minor BPS
41.3
-0.5
2.4
60.91
48.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007296
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007663
6798098 - 6821847
23750