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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6819008_6820248_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6819008 - 6820248
Intron Length:
1241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGGCCA
5'SS Class:
major
3'SS Sequence:
CCTTTGTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCCTTCTTAACC
Flanking Amino Acid:
YDLLPEADIDRRDEEGVQMT
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
57
41.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
77.9
0.63
0.9
75.9
38
Minor 5ss
33.5
-1.9
3
40.3
45.4
Minor BPS
77.9
0.86
1.2
77.35
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007296
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007663
6798098 - 6821847
23750