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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6820406_6821783_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6820406 - 6821783
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
GCTCCCCCCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
AGTTCTGACACT
Flanking Amino Acid:
EDAVSNSPDPMPGFCCTVGV
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
72.7
37.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
64.9
0.34
0.8
58.4
26.7
Minor 5ss
35.5
-1.6
3
44.3
37.2
Minor BPS
42.7
-0.4
2.5
66.31
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007296
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007663
6798098 - 6821847
23750