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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6834033_6834655_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6834033 - 6834655
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTCTT
5'SS Class:
major
3'SS Sequence:
GTGGTCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GCTTACTAAATT
Flanking Amino Acid:
HEGRFYEDFYKVVVQNERRE
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
77.2
37.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
71.2
0.48
1
62.3
44.3
Minor 5ss
48
-0.2
2.8
67.6
37.2
Minor BPS
56.6
0.28
1.9
73.41
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021159
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029177
6833654 - 6842699
9046