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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6834729_6835099_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6834729 - 6835099
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GCCTCCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
AAAATTATAACT
Flanking Amino Acid:
SRTFYEAKSIDEFPETHRAS
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
74
0.54
0.9
69.7
35.3
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
50.1
0.08
1.6
66.09
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021159
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029177
6833654 - 6842699
9046