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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6835170_6836678_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6835170 - 6836678
Intron Length:
1509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTCCTGGACA
Flanking Amino Acid:
FLADLFTKWKEKNCSHEVTV
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
100
1.24
0.5
100
0
Major PPT
71.1
0.48
1
68.2
37.5
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
72.5
0.7
1.4
79.36
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021159
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029177
6833654 - 6842699
9046