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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6836741_6837687_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6836741 - 6837687
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTGGT
5'SS Class:
major
3'SS Sequence:
GTTTACTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
GTGTGTTTACTT
Flanking Amino Acid:
SCEMWDFDIYGDLYFEKAVN
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
69
41.9
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
83.6
0.76
0.8
77.3
36.6
Minor 5ss
33.5
-1.9
3.5
46.5
44.1
Minor BPS
48.9
-0
2
67.66
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021159
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029177
6833654 - 6842699
9046