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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6838202_6838878_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6838202 - 6838878
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ATATTATGAACT
Flanking Amino Acid:
VTQKVEFAGIRAQAGELWVK
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1.2
75
35.3
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
91.8
0.94
0.6
84.6
30.3
Minor 5ss
28.4
-2.5
2.9
33.4
41.6
Minor BPS
58.8
0.36
1.7
77.58
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021159
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029177
6833654 - 6842699
9046