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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6838924_6839589_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6838924 - 6839589
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCCTATGCA
5'SS Class:
major
3'SS Sequence:
TTTCTTAGGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTCTTTTAACA
Flanking Amino Acid:
DMWRLKKSLVSTCAYVTQKV
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.2
63.9
38.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.8
0.51
1.1
74
40.4
Minor 5ss
23.5
-3
3.8
33
42
Minor BPS
72.9
0.71
1.1
77.15
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021159
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044986
6837718 - 6842699
4982