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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6841054_6841785_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6841054 - 6841785
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCATGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
ACTCATTTACCT
Flanking Amino Acid:
VEIAHPNDEYSPLLLQVKSL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.9
28.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
65.6
0.35
1
59.1
41.7
Minor 5ss
36.7
-1.5
3
50.4
46
Minor BPS
49.9
0.07
1.8
68.5
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021159
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029177
6833654 - 6842699
9046
ENSAPLT00000044986
6837718 - 6842699
4982