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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6852839_6857037_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6852839 - 6857037
Intron Length:
4199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACCC
5'SS Class:
major
3'SS Sequence:
TCCTCTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTAATCTACACA
Flanking Amino Acid:
KWQPSVGIENSLEPSFLLPL
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
65.8
38.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.9
0.7
0.8
75
33.4
Minor 5ss
32.6
-2
3.1
43.3
43.8
Minor BPS
47.7
-0.1
2.1
64.25
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007289
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007561
6852129 - 6859654
7526