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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6857207_6857504_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6857207 - 6857504
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCACCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TCATCTTAAATT
Flanking Amino Acid:
RSQDNTELKKTEPEKRPKKV
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
27.6
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
72
0.5
0.8
62.5
33.5
Minor 5ss
36.7
-1.5
2.8
41.8
38.8
Minor BPS
63.2
0.49
1.6
75.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007289
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007561
6852129 - 6859654
7526