About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6857612_6858594_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6857612 - 6858594
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
ATTACTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTTCATTACTT
Flanking Amino Acid:
LTPMGLPKPKRLKKKEFSLE
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.8
81.8
38.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
84.3
0.77
0.8
81.4
35.5
Minor 5ss
35.9
-1.6
3
50.5
45.8
Minor BPS
62
0.45
1.9
81.98
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007289
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007561
6852129 - 6859654
7526