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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6858667_6859335_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6858667 - 6859335
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTCT
5'SS Class:
major
3'SS Sequence:
TCGCTTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCGCTTTTACC
Flanking Amino Acid:
NKNYKSPPPARSLETIFEEP
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
73.5
38.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.7
0.58
0.9
69.6
40.4
Minor 5ss
37.8
-1.4
3
51.1
45.4
Minor BPS
59.4
0.28
1.8
70.02
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007289
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007561
6852129 - 6859654
7526