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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6868326_6868610_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6868326 - 6868610
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCTC
5'SS Class:
major
3'SS Sequence:
TTCCCTGCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTCCCTGCACT
Flanking Amino Acid:
ERYYGNMGALRCLVGNPSGR
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
67.1
44.6
Major BPS
79
0.72
1
69
38.9
Major PPT
65.2
0.34
0.9
59.1
37
Minor 5ss
48
-0.2
2.9
68.2
42.8
Minor BPS
63.9
0.52
1.9
86.75
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028076
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039793
6866109 - 6868780
2672