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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6884816_6884896_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6884816 - 6884896
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGTTTTTA
5'SS Class:
weak_major
3'SS Sequence:
AAAAAAAAAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTACATATAT
Flanking Amino Acid:
CEESTAEKSLIVELSHLL
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.1
67.7
33
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
41.8
-0.4
1.1
26
33.2
Minor 5ss
46.9
-0.3
2.7
61.8
43.3
Minor BPS
49.8
0.06
2.1
79.75
41.4

Associated Gene:

Gene:
PISD
Ensembl Gene ID:
ENSAPLG00000020568
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023545
6884791 - 6905545
20755