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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6884919_6888513_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6884919 - 6888513
Intron Length:
3595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTATTTTCT
5'SS Class:
weak_major
3'SS Sequence:
TCTTTCCTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTCCTTAAAG
Flanking Amino Acid:
AEKSLIVELSHLLFFVTDRK
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.1
61
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.1
0.63
1
78.7
27.5
Minor 5ss
54.3
0.14
2.3
73.5
36.5
Minor BPS
76.7
0.7
1.5
76.73
40.6

Associated Gene:

Gene:
PISD
Ensembl Gene ID:
ENSAPLG00000020568
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023545
6884791 - 6905545
20755