About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6902150_6902290_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6902150 - 6902290
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GAATTCCTAATG
Flanking Amino Acid:
ARPVCCLHSVISPSDGKILN
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
87.8
0.85
0.6
84.9
22.8
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
50.9
-0.1
1.7
54.86
40.1

Associated Gene:

Gene:
PISD
Ensembl Gene ID:
ENSAPLG00000020568
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038002
6897614 - 6905367
7754
ENSAPLT00000023545
6884791 - 6905545
20755