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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6903478_6904846_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6903478 - 6904846
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTTC
5'SS Class:
major
3'SS Sequence:
CTTGCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTGAGTTTGAAT
Flanking Amino Acid:
WKVSHRRHFPGSLMSVNPGV
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
74.3
37.2
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
78.7
0.65
0.9
72.5
37.6
Minor 5ss
39.7
-1.2
3
52.8
44.4
Minor BPS
48.2
-0
1.9
68.42
42.8

Associated Gene:

Gene:
PISD
Ensembl Gene ID:
ENSAPLG00000020568
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023545
6884791 - 6905545
20755