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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6905008_6905320_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6905008 - 6905320
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
AAATCCTCAACT
Flanking Amino Acid:
VGSIRIYFDQDLHTNSPFYS
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
77.7
0.62
0.9
72
38
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
71.2
0.74
1.5
81.62
39

Associated Gene:

Gene:
PISD
Ensembl Gene ID:
ENSAPLG00000020568
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023545
6884791 - 6905545
20755