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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6941756_6942567_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6941756 - 6942567
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
TTTATTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
AATCTTGTAACT
Flanking Amino Acid:
RPSCLSEKYDSDGVWDPEKW
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
88.4
0.86
0.7
85
29.6
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
52
0.14
2
72.42
38.5

Associated Gene:

Gene:
EIF4ENIF1
Ensembl Gene ID:
ENSAPLG00000004503
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004665
6937824 - 6957506
19683