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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6942696_6943251_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6942696 - 6943251
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGATCTTTGATT
Flanking Amino Acid:
DRTSLMRRIVDPRERVKEDD
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79.2
0.66
0.8
73.8
35.8
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
71.7
0.76
1.1
80.25
35.7

Associated Gene:

Gene:
EIF4ENIF1
Ensembl Gene ID:
ENSAPLG00000004503
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004665
6937824 - 6957506
19683