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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6944290_6945658_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6944290 - 6945658
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGCA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
AATTATTTGATT
Flanking Amino Acid:
TRRRTASLKEGIECNGGVAE
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.6
36.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
85.2
0.79
0.9
90.8
21.8
Minor 5ss
29.6
-2.3
3.4
39.3
46
Minor BPS
61.1
0.43
1.4
74.85
35.7

Associated Gene:

Gene:
EIF4ENIF1
Ensembl Gene ID:
ENSAPLG00000004503
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004665
6937824 - 6957506
19683